![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G231500.1.p | ||||||||
Common Name | PRUPE_ppa012516mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17849.1 Da PI: 8.6322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Prupe.6G231500.1.p 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 70 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.7E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 21 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.66E-25 | 22 | 80 | No hit | No description |
PRINTS | PR00367 | 2.0E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 22 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MDGGGGAAET NRKRGVENDK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPIAAARA 60 YDTAVFYLRG PSARLNFPEA LPVEGGGVGC GCGDMSAALI RKRATEVGAR VDAVETAMRH 120 HRGGTAAPNG GAAEIKPCVG GFVDRVDLNK MPDPENSDGD CEWETN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 20 | 78 | 4 | 63 | ATERF1 |
3gcc_A | 1e-14 | 20 | 78 | 4 | 63 | ATERF1 |
5wx9_A | 2e-14 | 1 | 88 | 1 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G231500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422254.1 | 1e-119 | ethylene-responsive transcription factor ERF011 | ||||
Swissprot | O22174 | 1e-56 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | M5WD73 | 1e-117 | M5WD73_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07233 | 1e-118 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-58 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G231500.1.p |
Entrez Gene | 18773759 |
Publications ? help Back to Top | |||
---|---|---|---|
|