PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G217000.1.p
Common NamePRUPE_ppa003017mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 613aa    MW: 66013.1 Da    PI: 7.3734
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G217000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.6e-24238282145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Prupe.6G217000.1.p 238 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 282
                         79****************************************985 PP
2QLQ58.32.3e-20169205137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k
  Prupe.6G217000.1.p 169 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPLKK 205
                         59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11169205IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-14170203IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.429170205IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287238282IPR014977WRC domain
PfamPF088797.9E-21239281IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDFGGMGLEG LVGPEGGATG AAHSLASDPE TKPKGHAPNV PHGSGSVKQQ RSWPAEDDWR  60
TSKMPKNDDL PAPKTMPLQY QGTPLLRSNS LLPADTHRQE QMLSFSNNKS EVTFLSKDGM  120
LERTIQGPDF AYYQRTPALT PSAYTRNAAA YGSGSINPSM HGPFAGVRGP FTPSQWIELE  180
HQALIYKYMT SNVPVPSNLL IPLKKSLYPY GLSGSTGNLA PNSLAWGSYH LGFSGNTDPE  240
PGRCRRTDGK KWRCSRDAVA DQKYCERHIN RGRHRSRKPV EGQPGQAASG TSNSKGVPMT  300
SSMSTPVMPS TGTSNNVATM QNQFKSLQPA GAANPSADAF VNRMQDPRGL SVMSASTIKP  360
KASDSRFNMP KQEIPVEESS QSEFGLVSTD SLLNPSHRNS YISKDFGGSF LDFSDQEAQD  420
QHPLRQFIDD WPKDQSSHSV STWPDEIKSD WTQLSMSIPM TSSEFSSSSS SPTQEKRALS  480
PLRLSREFEP AQMNLGASNE LSESSQKTNW IPISYGNSMG GPLGEVLTNT TSSGKMCNNS  540
VSPLNLINEG WDGSPQLGSS PTGVLQKSTF CSLSNSSSGS SPRGENKKNL DGASIYDDVL  600
GSTFASSSVP SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G217000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4886163e-63AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208030.10.0growth-regulating factor 1 isoform X1
TrEMBLM5W6960.0M5W696_PRUPE; Uncharacterized protein
STRINGEMJ092290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-108growth-regulating factor 1