PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 286aa MW: 31537.4 Da PI: 8.4875

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G213800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.3e-19	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Prupe.6G213800.1.p 140 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 194 788899***********************************************98 PP
2	HD-ZIP_I/II	125.3	2.7e-40	140	229	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Prupe.6G213800.1.p 140 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 229 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-18	123	194	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.01E-19	129	197	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.718	136	196	IPR001356	Homeobox domain
SMART	SM00389	1.0E-15	138	200	IPR001356	Homeobox domain
CDD	cd00086	2.14E-17	140	197	No hit	No description
Pfam	PF00046	3.2E-16	140	194	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-25	196	239	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.5E-10	196	230	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGFDDHPCNT GLVLGLGLTT SSPQESTSPP KAHNPSRFAN KPSPNSAPTS ATFEPSLTLG 60 LPGEPYHQLV ASNYKGGGNS HEEAIDLYRQ ASSPHSHSAV SSFSSGRVVK RERDLSSEEV 120 EVEKVSSRVS DEDEDGSNAR KKLRLTKEQS ALLEESFKQH STLNPKQKQA LARQLNLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE TLTDENRRLQ KELQELKALK LSQPLYMHMP 240 AATLTMCPSC ERIGGVGSEG ASKSPFSMAP KPHFYNHFTN PSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	196	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.4097	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G213800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205679.1	0.0	homeobox-leucine zipper protein HAT22
Refseq	XP_008237058.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-101	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	M5WC80	0.0	M5WC80_PRUPE; Uncharacterized protein
STRING	XP_008237058.1	0.0	(Prunus mume)
STRING	EMJ06878	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-75	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G213800.1.p
Entrez Gene	18773282

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]