PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G187700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CAMTA
Protein Properties Length: 1132aa    MW: 126592 Da    PI: 5.8973
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G187700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55411572118
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ k+rwl++ ei++iL n++k+++++e+++ p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een+
  Prupe.6G187700.1.p  41 LEAKHRWLRPAEICEILRNYKKFHISSEPASMPPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENE 131
                         6679*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Lee+l++ivlvhy+evk
  Prupe.6G187700.1.p 132 NFQRRSYWMLEEDLQHIVLVHYREVK 157
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.4736162IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7739157IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-4942155IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-6545631IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.51E-18546631IPR014756Immunoglobulin E-set
PfamPF018339.5E-7546630IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.8E-17713841IPR020683Ankyrin repeat-containing domain
CDDcd002048.69E-13726838No hitNo description
PROSITE profilePS5029717.555729850IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.22E-16735840IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-6763842IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0097779808IPR002110Ankyrin repeat
PROSITE profilePS500889.484779811IPR002110Ankyrin repeat
SMARTSM00248300818847IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-89491004IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001514953975IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364955983IPR000048IQ motif, EF-hand binding site
PfamPF006120.052956974IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039976998IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.5789771001IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4979998IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MYEIQVGSGC GISVTTTRIE FMADTKRYGL GNQLDIAQIL LEAKHRWLRP AEICEILRNY  60
KKFHISSEPA SMPPGGSLFL FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKAGSVDVL  120
HCYYAHGEEN ENFQRRSYWM LEEDLQHIVL VHYREVKGNR TNFNHTKGTE EAVPYSHETE  180
EIALNSEMEN SVSSSFNPNT FQMRSQATDT TSLSSAQASE FEDAESAYDH QASSRLQPFL  240
ELLQPKAEKI NAGFSDAFYP MSFSNNYQEK LSAIPGVNFG SLTQAYKRED GNDAGVNYEP  300
TKNLNSSLWE AALENSATGF QSLSFQPSFS ATHSDTMGII SKQENGMLGH LFTDSFEKKQ  360
MCESKPRVQQ GWQTLEENSS CSSSWLMDRN LHSNTVDDVS SFHEGLNAAN LLNSLAPCHM  420
NSDKTNDYSI PNDLQIQPST TEQEYYLKSI SKRNETIEGK ANHASAIKPL LDGPFTEGLK  480
KLDSFNRWMS RELGDVDDTQ TQSNSETYWD TVESENGVDE SSVPLQVRLD SYMLGPSLSQ  540
DQLFSIIDFS PNWAYENSEI KVLITGRFLK SQQAEACKWS CMFGEVEVRA EVIADGVLRC  600
YTPVHKAGRV PFYVTCSNRL ACSEVREFEY RVGQIPDYDA KDDNSGCTND ILSMRFGKLL  660
SLSSTSPTFD PNSLAENSVL INKIDSLLKN DNGEWDRMLQ LTSDEDFSSE RVEEQLLHQL  720
LKEKLHVWLL QKLAVGGKGP SVLDEDGQGV LHFGAALGYD WVLLPTITAG VSVNFRDVNG  780
WTALHWAASC GRERTVASLI SLGAAPGALT DPSTKYPTGR TPADLASAEG HKGIAGYLAE  840
SALSAHLSSL NLDIKEGNNA GISGANAVQT VSERIATPIG NGDLTDGLSL RDTLTAVCNA  900
TQAAARIHQV FRVKSFQRKQ LKEYGGNEFG ISDEHALSLI AVKSHKPGKR DEHVDAAAIR  960
IQNKFRSWKG RKDYLIIRQR IVKIQAHVRG HQVRKNYRKI VWSVGIVEKI ILRWRRKGSG  1020
LRGFKSEPLI EGPSIQVSSS KDDDYDLLKE GRKQNEERLQ KALARVKSMV QYPEARDQYR  1080
RLLNVVTEIK ETKVVCDSAA NSSEGRADMD DDLIDFAELL DEDIFMPTAG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-13546633991calmodulin binding transcription activator 1
2cxk_B2e-13546633991calmodulin binding transcription activator 1
2cxk_C2e-13546633991calmodulin binding transcription activator 1
2cxk_D2e-13546633991calmodulin binding transcription activator 1
2cxk_E2e-13546633991calmodulin binding transcription activator 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G187700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421611.10.0calmodulin-binding transcription activator 3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A251NSH90.0A0A251NSH9_PRUPE; Uncharacterized protein
STRINGXP_008234047.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]