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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G138100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 42711.4 Da PI: 6.3575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.5 | 6.6e-50 | 17 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrF+Ptdeel+++yLk+k+eg + + evi+evdi+++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+ Prupe.6G138100.2.p 17 MFPGFRFSPTDEELISYYLKNKLEGPEpGKSVEVIPEVDICNFEPWDLPaKSVIQSDNEWFFFSPRGRKYPNGSQSRRATEFGYWKATGKE 107 579**********************996444589***************667777899********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s +++++g+k+tLvf+ grapkge+t+W+mhey + Prupe.6G138100.2.p 108 RNVKS-TSNVIGTKRTLVFHMGRAPKGERTEWIMHEYCM 145 *****.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-55 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.507 | 17 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-26 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGAVSKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKLE GPEPGKSVEV IPEVDICNFE 60 PWDLPAKSVI QSDNEWFFFS PRGRKYPNGS QSRRATEFGY WKATGKERNV KSTSNVIGTK 120 RTLVFHMGRA PKGERTEWIM HEYCMNDKSQ DSIVVCRLRK NSDFRLNDTT NGGSSSRNPL 180 STVHNSENAV SEVGIIDYDK PVECYSKKST SSHDSHSTEQ IDSASESNQK QTTEVTQTES 240 SGHQKGSYDD DFYADILNDD IIKLDEVSVS ASADTLPVLA NKSEAEQNSH QPMQAICNSE 300 AIPFQGTANR RIHLRKRKEK FPAESLDGPN SHESPKTSAD RMDDQHVLLY VSAKSKTSQV 360 SLCIKVLPQN VNIRLFFLTW S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 5e-42 | 16 | 160 | 19 | 167 | NAC domain-containing protein 19 |
4dul_A | 4e-42 | 16 | 160 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 4e-42 | 16 | 160 | 16 | 164 | NAC domain-containing protein 19 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 314 | 319 | RKRKEK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G138100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421679.1 | 0.0 | NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 5e-91 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | A0A251NQ14 | 0.0 | A0A251NQ14_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229937.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 7e-92 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G138100.2.p |
Publications ? help Back to Top | |||
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