PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G134400.1.p | ||||||||
Common Name | PRUPE_ppa010337mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28999.5 Da PI: 5.5214 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.6 | 1.9e-47 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppG+rF Pt+eelv++yL +k+egk+ ++ +vi+ vdiy+ ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg Prupe.6G134400.1.p 4 LPPGYRFYPTEEELVSFYLLNKLEGKRDDTRRVIPVVDIYSKEPWDLPKfsgeLCHGDTEQWFFFTPRQQREAQGGRPNRTTASGYWKATG 94 79****************************99****************656754445777******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Prupe.6G134400.1.p 95 SPGYVYSSDNKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-51 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.294 | 4 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEELPPGYRF YPTEEELVSF YLLNKLEGKR DDTRRVIPVV DIYSKEPWDL PKFSGELCHG 60 DTEQWFFFTP RQQREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEADN PTTTSTSVPK YLRNEFRLCR VYVVSGSCRA FDRRPLEGSG 180 ETKHQLSESM GGTSTFSLKA PMVEKASSSD ETFSYSEELA DLPETYAGIN STNWEIIEGL 240 EQPLWEWEQL NLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-37 | 4 | 162 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-37 | 4 | 162 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-37 | 4 | 162 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-37 | 4 | 162 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 8e-37 | 4 | 162 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 7e-37 | 4 | 162 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 7e-37 | 4 | 162 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G134400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051766 | 2e-43 | BT051766.1 Medicago truncatula clone MTYF5_F6_F7_F81G-H-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007207479.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-90 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M5WHE7 | 0.0 | M5WHE7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ08678 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-92 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G134400.1.p |
Entrez Gene | 18774757 |
Publications ? help Back to Top | |||
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