PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G121700.1.p

Common Name

PRUPE_ppa007024mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 398aa MW: 44596.1 Da PI: 3.9922

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G121700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.5	1.8e-08	26	67	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ +kR ++ KA LS LCd+ v +i ++ +gk+ ++ Prupe.6G121700.1.p 26 QKTAMAKRGSTLKNKAGRLSKLCDIAVYMIAVGADGKINAWP 67 568899*********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.03E-7	26	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-4	28	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MALPKSNPRV SASMKMKRVS DAMKPQKTAM AKRGSTLKNK AGRLSKLCDI AVYMIAVGAD 60 GKINAWPENQ QDLKSVLLKY KNLKRGFKNG IEKGLFSVEK GFLDIVDDRE NRDLGIQDNC 120 LGAKLESLNE RIGAVTMKMM MMRDDDKCSF IDLYKNIMEP DAADQQQLSS LNLNLNLHPT 180 DLVVPTPKPS LIGEINLNLD PGDLVIPTAN SISQFQQDYL SSIHEPTVDA NDYLSLLMGN 240 DDHNDVGLME DYLQLYDLEL PEEPQEQPQP QPPSVPSVEI SDDDMKLQLS DCEIGLMEDD 300 MQFCDNLDDY EPTVDTIYDF LSWVLGDEDQ NDNGAMEDDV QPQSTNHISD DEHDDIRLLL 360 TDCEIGLMQE DLQFCDNDLS DFLAPLETML LQDPQHG*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MALPKSNPRV SASMKMKRVS DAMKPQKTAM AKRGSTLKNK AGRLSKLCDI AVYMIAVGAD  60
GKINAWPENQ QDLKSVLLKY KNLKRGFKNG IEKGLFSVEK GFLDIVDDRE NRDLGIQDNC  120
LGAKLESLNE RIGAVTMKMM MMRDDDKCSF IDLYKNIMEP DAADQQQLSS LNLNLNLHPT  180
DLVVPTPKPS LIGEINLNLD PGDLVIPTAN SISQFQQDYL SSIHEPTVDA NDYLSLLMGN  240
DDHNDVGLME DYLQLYDLEL PEEPQEQPQP QPPSVPSVEI SDDDMKLQLS DCEIGLMEDD  300
MQFCDNLDDY EPTVDTIYDF LSWVLGDEDQ NDNGAMEDDV QPQSTNHISD DEHDDIRLLL  360
TDCEIGLMQE DLQFCDNDLS DFLAPLETML LQDPQHG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1719	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G121700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421081.1	0.0	agamous-like MADS-box protein AGL75
TrEMBL	A0A251NP84	0.0	A0A251NP84_PRUPE; Uncharacterized protein
STRING	XP_008227332.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17147	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	6e-08	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Prupe.6G121700.1.p
Entrez Gene	18775021