PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G121300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 342aa    MW: 38403.4 Da    PI: 4.0437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G121300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.6e-082667950
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        +++  +kR  ++  KA  LS LCd+ v +i ++ +g++  ++
  Prupe.6G121300.1.p 26 QKTAMAKRGSTLKNKAGRLSKLCDIAVYMIAVGADGEIDAWP 67
                        568899********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-62683IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALPKSNPRV SASMKMKRVS DAMKPQKTAM AKRGSTLKNK AGRLSKLCDI AVYMIAVGAD  60
GEIDAWPEIQ QDLKSVLLKY KNLKRGFKDG IEKGLFSVEK GFLEIVDDRE NRDLGIQDNC  120
LGAKLESLNE RIGAVTMKMM RDDGKCSFMD LYKNIMEPDA ADQQQLSSLN LNLNLDPTDL  180
VVPTPKPNLI GEINLNLDPE EPQEQPQPQP PSVPSVEISD DDMKLLLSDC EIGLMEDDMQ  240
FCDNLDDYEP TVDTIYDFLS WVLGDEDQND NGAMEDDVQP QSTNHITDDE HDDIRLLLTD  300
CEIGLMQEDL QFCDNDLSDF LAPLETMLVQ HQPHFELNLN F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.17190.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G121300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420972.10.0uncharacterized protein LOC109949539
TrEMBLA0A251NPA70.0A0A251NPA7_PRUPE; Uncharacterized protein
STRINGEMJ066760.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1714726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-08AGAMOUS-like 103