PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 115aa MW: 12653 Da PI: 4.607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G116200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37	1.1e-11	42	102	1	65
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 +fY++YA++vGF+++k++skk + ge + t+ Cs++g ++++ ++ ++ ++ +++Cka+ Prupe.6G116200.1.p 42 DFYKKYANRVGFQMKKRSSKKG-DCGELKYVTLSCSRSGIPQSTASN---VLKPYPSVKCNCKAQ 102 6*************998887.8889************9888...89999******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-8	42	102	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSEENDEVEI GETGLENTMS PEETTQEPKV NMIFNTADEV LDFYKKYANR VGFQMKKRSS 60 KKGDCGELKY VTLSCSRSGI PQSTASNVLK PYPSVKCNCK AQNAQDSHGG MDDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G116200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199084.2	6e-61	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_021830652.1	8e-63	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	M5W3T5	5e-80	M5W3T5_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ07976	8e-81	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-10	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Prupe.6G116200.1.p
Entrez Gene	18772180