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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.6G113300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
C2H2 |
| Protein Properties |
Length: 417aa MW: 46504.3 Da PI: 8.4923 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.6G113300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.2 | 3.6e-07 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Prupe.6G113300.1.p 234 HYCQVCGKGFKRDANLRMHMRAH 256
68*******************99 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MISGATSNCF QTMPQQEEDE HQGLQIFSMT EDPQVSSFST SSGPENHSTS LLYSLSVLKE 60
KVRQAKSLFS ILISPDHHHH QSQPPESTSM AIASMNNVIQ EIIVTASSMM FTCQQMALVS 120
PPPPPPPPGN NNPTSTSNTI DHEEQLLHHQ GLNKPPPPRF SQPNFGSGLD NKIETPFYPT 180
NDDQALDWFS DSYIDCTTRD TKTRHVQGKQ QPISPKSFDI IELDAADLLA KYTHYCQVCG 240
KGFKRDANLR MHMRAHGDEY KTTVALSNPM KKNNSSTNNN NNHGAGGTDG NTDCSTNLPR 300
KYSCPQVGCR WNQKHAKFQP LKSMICVKNH YKRSHCPKMY VCKRCNRKQF SVLSDLRTHE 360
KHCGDLRWQC SCGTTFSRKD KLMGHVALFT GHTPVVISSL ASRLGKADQR SHGSQM*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
