PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G106200.24.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 481aa    MW: 54672.8 Da    PI: 8.5114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G106200.24.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08358406348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +l+++v q G g+W++  r +     +Rt+ ++k++w+++l
  Prupe.6G106200.24.p 358 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 406
                          6***********************888887*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.187351410IPR017930Myb domain
SMARTSM007171.5E-9355408IPR001005SANT/Myb domain
PfamPF002495.1E-7358406IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-14358412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-12358407IPR009057Homeodomain-like
CDDcd116605.72E-17359407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MFQGTDNAVC HGRISLPTCQ EYLWEAKHSD KVFKSEGGPD SCLQNAGLES HSPGVYKEYC  60
GAEMSDLSCE STPRLGYKDN RSSLLLDHMS VQERQLVFRN MFRYETPVID KQWPKHSISP  120
GLQNFFGLES GSNLAECGLM TTKNEVKTVL SSSIEFFGKD TGTIKGSLSD EGMSRDLQVK  180
WKKLADLESL KTSNSRVSEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAESKSKFYS  240
RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPVEAGQLEE  300
HNSSLNSEDC KDHRLLRSSE KLEIEYSPAK SREEISDDEC VLRRSTQKDS KQIKHYTSWT  360
SSEVMKLIEG VSQCGVGRWS AMKRLLFSSC SHRTAVDIKD KWRNLLKASC TQLQKERKIK  420
RDISKQASDH VPESVLQRVR ELAVIYPYPR RKRSTCNTHA MSSFATNECN ALPPKEKIDY  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G106200.24.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423147.10.0uncharacterized protein LOC18772343 isoform X6
TrEMBLA0A251NR390.0A0A251NR39_PRUPE; Uncharacterized protein
STRINGXP_008226083.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-28TRF-like 6