PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G106200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 649aa    MW: 74054.2 Da    PI: 8.3086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G106200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08358406348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +l+++v q G g+W++  r +     +Rt+ ++k++w+++l
  Prupe.6G106200.1.p 358 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 406
                         6***********************888887*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.187351410IPR017930Myb domain
SMARTSM007171.5E-9355408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-12358407IPR009057Homeodomain-like
PfamPF002497.6E-7358406IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-14358412IPR009057Homeodomain-like
CDDcd116605.84E-17359407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MFQGTDNAVC HGRISLPTCQ EYLWEAKHSD KVFKSEGGPD SCLQNAGLES HSPGVYKEYC  60
GAEMSDLSCE STPRLGYKDN RSSLLLDHMS VQERQLVFRN MFRYETPVID KQWPKHSISP  120
GLQNFFGLES GSNLAECGLM TTKNEVKTVL SSSIEFFGKD TGTIKGSLSD EGMSRDLQVK  180
WKKLADLESL KTSNSRVSEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAESKSKFYS  240
RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPVEAGQLEE  300
HNSSLNSEDC KDHRLLRSSE KLEIEYSPAK SREEISDDEC VLRRSTQKDS KQIKHYTSWT  360
SSEVMKLIEG VSQCGVGRWS AMKRLLFSSC SHRTAVDIKD KWRNLLKASC TQLQKERKIK  420
RDISKQASDH VPESVLQRVR ELAVIYPYPR RKSQQGNSSV YVFFSSLSQV VVVIWSALII  480
AVRVTNLAIY LLICVVWLLA FDFLMDFLYP LTFQSCKTSD HSNINLQSVI AVLLQWCVFF  540
FFFPYTNDRI FSKIPRYRDR TGQLQCLEST FCIQGICCNN NSEDCKDHRL LGSSEKLEIE  600
YSPAKSREEI SEDESVSRIN TRKGSKQTKL YTSWTSSQVM KLIEGQMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G106200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423144.10.0uncharacterized protein LOC18772343 isoform X4
TrEMBLA0A251NQ170.0A0A251NQ17_PRUPE; Uncharacterized protein
STRINGXP_008226083.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-27TRF-like 6