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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.6G102800.1.p |
Common Name | PRUPE_ppa002082mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
ARF |
Protein Properties |
Length: 720aa MW: 79306.5 Da PI: 7.7193 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.6G102800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 71.2 | 1.3e-22 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +++ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF
Prupe.6G102800.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHSEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 199
89****************************996555555..8************************************************. PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+ +++ l+v+++r+
Prupe.6G102800.1.p 200 -RAENGDLCVGIRRA 213
.4488999****997 PP
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2 | Auxin_resp | 117.3 | 1.3e-38 | 286 | 369 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
Prupe.6G102800.1.p 286 AATMAANGQAFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTIASVQVSDPIRWPNSPWRLLQ 369
68899*****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 720 aa
Download sequence Send
to blast |
MRDSERSLDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQAHVDFSSA SLRIPSLILC 60 RVASIKFMAD PETDEVFAKI KLNPIENNEP YASDEDSMEA DGSENQEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHSE IWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGLDGA GGPELASGWN NSHGGGSGAC 240 VLPYGGFSVF LREEENKMVR NGGGNLSPNG NLRGKGRVRP ESVVEAATMA ANGQAFEVVY 300 YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVSDPIRW 360 PNSPWRLLQV TWDEPDLLQN VKCVSPWLIE LVSNFPMIHM SPFSPPRKKL RLPQPDFTLD 420 GQLTLPSFSG NPLGPSSPLC CLPDNTPAGI QGARHAQFRI SLSDLHVNNK LQSGLFQSSF 480 QRFDQNSRIS SGIRAGHTSS NENLSCLLTM GNSSQNSEKS DNVKKHQFLL FGQPILTEQQ 540 ISRSCSSDAV SQLLTGKDSK DGNQDRTKFL SDGSKSAHGM QVSLEKSSNA GFPWNKDFQG 600 SDFDLETGHC KVFMESEDVG RTLDLSVLGS YEELYRRLAN MFGIEKPQML SHVLYRDVTG 660 AVKQTGVEPF SDFMKKAKRL TILTHPTDES IGRTWIRGMQ NAENGLSATN KTGPLSIFA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |