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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G070100.1.p | ||||||||
Common Name | PRUPE_ppa021945mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22851.2 Da PI: 7.7412 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Prupe.6G070100.1.p 28 YECTFCKRGFSNAQALGGHMNIH 50 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.3E-7 | 25 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 25 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0099 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MESDQAIQEN SEQVSDDKQG ASQAAKSYEC TFCKRGFSNA QALGGHMNIH RKDKAKLKQV 60 SSSNTIETKQ HQQQQQRLLD IPKMPSSYSS PIVPTINSSE HNKLKPSRDA ERNTSTWPWF 120 LNEEGDATMR HNIDPNHLSQ VQQQLPLFSQ ATSQARVHEN PGLRQVHGDQ GLQPSASELD 180 LELRLGPERQ DSSSKANTTR KFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G070100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM370493 | 4e-78 | HM370493.1 Malus domestica zinc finger protein (SUP11) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007206630.1 | 1e-151 | transcriptional regulator SUPERMAN | ||||
TrEMBL | M5W282 | 1e-149 | M5W282_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07829 | 1e-150 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 1e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G070100.1.p |
Entrez Gene | 18773976 |