PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G056300.1.p | ||||||||
Common Name | PRUPE_ppa002251mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 696aa MW: 75742.7 Da PI: 5.8652 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.5e-06 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Prupe.6G056300.1.p 277 PCPEFRK-GACRQGDACEYAHG 297 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.04E-11 | 28 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.8E-13 | 31 | 171 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.567 | 73 | 143 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.017 | 73 | 103 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.1E-7 | 73 | 138 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.53E-6 | 75 | 146 | No hit | No description |
SMART | SM00248 | 0.77 | 108 | 140 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.938 | 108 | 143 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 7.1E-5 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.455 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 28 | 307 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.925 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MCSGSKRKPS STDLIMEREK QEGMRYSFSI LLELSASDDL DGFKRAVEEE GHDVDEASYW 60 YGRLIGSKKM GFEERTPLMI AAMFGSKNVL NYILQTCLVD VNRACGSDRA TALHCAAAGG 120 SSASAEVVKL LLATSADASS LDANGNQAGD LIAPAYSSTF NSRKKALEVM LKGVPSIDEP 180 FDFSEQMVYE TEGQEQQEIT TPCASKDGTE KKEYPIDLSL PDIKNGIYST DEFRMYTFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGACRQGD ACEYAHGIFE 300 CWLHPAQYRT RICKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SANASSLDMG 360 SISPLSLNSP SMLIPPASTP PMTPSGASSP RSGNMWQNQP NIAPPTLQLP GSRLKSTLSA 420 RDMDLDIEVL SLESHRRRQQ RLIDEISGSP SSWNTGLSSP SAFAASGNRT GELNRIGGVN 480 PTNLDDIFGS LDPAILPQYN GPASQLHSPT GIQMRQNMNL QPRPSYSASL SSSPVRASPL 540 FGADASSAAA VFSSRSAAFA KRSQSFIERS AGNRNPGFSS PADSGTLMPS NISDWGSPGG 600 KLDWGMQGEE LNKLRKSASF GFRSSNAPTR MPGTADEPDV SWVQSLVKDA PPPSQLGQYG 660 FEDQQQPQCH PNNGGPEMLP AWVEQLYLEQ EQMVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13243 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G056300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208332.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Refseq | XP_020421186.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | M5W885 | 0.0 | M5W885_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09531 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G056300.1.p |
Entrez Gene | 18774812 |