PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G043900.2.p
Common NamePRUPE_ppa019397mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 226aa    MW: 24526.8 Da    PI: 8.4757
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G043900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.81.4e-41321311100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l+
  Prupe.6G043900.2.p  32 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQ 122
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         +el+++++e
  Prupe.6G043900.2.p 123 QELNAVRTE 131
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.70931132IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-4132129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGTMSTARHN NSFGRPQGMM MMNNTTLNTI TPCAACKLLR RRCAEECPFS PYFSPHEPQK  60
FSAVHKVFGA SNVSKMLIEV AENQRADAAN SLVYEANLRL RDPVYGCMGV ISTLQQQIQS  120
LQQELNAVRT EILRYQYKEA TNHMVSSTNI MHHHPSLVST SGMVSIAGPP QAIPKPPPPP  180
PPPPPPSSSV VFSSSSSSSA SSLYNPSTNT TGYSSMSSDN IPYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-45251394118LOB family transfactor Ramosa2.1
5ly0_B2e-45251394118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G043900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206519.21e-166LOB domain-containing protein 15
SwissprotQ9AT619e-71LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A251NK431e-164A0A251NK43_PRUPE; Uncharacterized protein
STRINGEMJ077181e-165(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-59LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]