PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G022200.2.p | ||||||||
Common Name | PRUPE_ppa006295mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 43191.6 Da PI: 7.9657 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17 | 1e-05 | 354 | 379 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Prupe.6G022200.2.p 354 SIAERVRRTRISERMRKLQELVPNmD 379 689********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.559 | 348 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-6 | 351 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00173 | 352 | 380 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-5 | 353 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FANLDSDFCE PLFNRPSSPE TERIFARFLT 60 GEGGGNGDGG GGGTEETASH HKVTTQTNNQ QTQFMVPKVD NEAVVIQQQQ QSHLNNYSSV 120 SQGFYQSPSS KPPLPNQSLN SANEGAYSMG TSQLPSVKTG GVTNSNLIRH SSSPAGLFSH 180 MNIDVTGYAA LRGMGNYGAS NSTNEEASFS STSRLKNFSS GPPSTSGLMS PIAEIGNKRM 240 RSDNQDSRGF GDGSGNNYVT GFPIDSWDDS AMMSGDITRS TSFREDDIKA FTGLSPSETQ 300 DVEAGNRPPT LLAHHLSLPK TSAEMAAIEK FMQFQDSVPC KIRAKRGCAT HPRSIAERVR 360 RTRISERMRK LQELVPNMDK TLSDNRAKCT CSSKPQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G022200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205257.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
TrEMBL | A0A251NJ12 | 0.0 | A0A251NJ12_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06456 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 6e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G022200.2.p |
Entrez Gene | 18772412 |