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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.6G015000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
RAV |
Protein Properties |
Length: 357aa MW: 41305.4 Da PI: 6.6033 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.6G015000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 32.1 | 2.8e-10 | 48 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++
Prupe.6G015000.1.p 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLRN 95
789996.566899****999......44**********99*************97 PP
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2 | B3 | 91.5 | 6.4e-29 | 173 | 267 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+k+ltpsdv+k++rlv+pkk+a e+ +++ +++l+++d+ r+W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D+++F+
Prupe.6G015000.1.p 173 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEENGVDDIELVFYDKLMRVWKFRYCYWKSSQSFVFTRGWNRFVKENNLKANDVITFY 263
99*****************************87744444889************************************************9 PP
E-SS CS
B3 84 ldgr 87
++
Prupe.6G015000.1.p 264 TCEN 267
6544 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MEEDAASSMI SRVQRNVALE TSGSNDNDFG LLHPNKRARL DNDVSFAKFK GVVPQQNGHW 60 GAQIYANHQR IWLGTFKSEK EAAMAYDSAA IKLRNGKDLH RNFPWTNFTI QEPDFQNHYT 120 TDAIIKMIRD GSYPSKFDAF IRSQKQSQTE EMGKGNNSIR VHGDGKILSR QLFQKELTPS 180 DVGKLNRLVI PKKYAVEYFP CICENVEENG VDDIELVFYD KLMRVWKFRY CYWKSSQSFV 240 FTRGWNRFVK ENNLKANDVI TFYTCENDDQ LREEDRESAT FWLIDVMHIE GESKRSCLLE 300 QEINKHECED LQVKLELNLG GSSSYKFQQG ECKYSEDHKA SMADQKGFRL FGVNIN*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |