PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G195000.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 393aa MW: 45007.1 Da PI: 9.9466

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G195000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.2	4.3e-23	280	323	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Prupe.5G195000.1.p 280 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 323 67999*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55681	7.37E-43	13	223	No hit	No description
Gene3D	G3DSA:3.90.1550.10	2.8E-55	14	229	No hit	No description
PROSITE profile	PS51733	10.658	39	225	IPR004143	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain
PROSITE profile	PS50066	25.455	271	323	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-29	271	330	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-25	272	365	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	273	293	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-21	282	324	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	293	308	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	308	329	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006464	Biological Process	cellular protein modification process
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MATPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTN DPTIVMGISG 60 KPAELLEIDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNADAVAGLQ PYPRPIMSWS 120 SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL 180 PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNTKFV 240 PSTRLLTRQE LEEAAFGSHA ETTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK 300 KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSTVEEIISK FAQLTPQERA KRKLESLEAL 360 KKTFKKLDHD VNVQEFMSSR YVIVFIRFVI SF*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MATPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTN DPTIVMGISG  60
KPAELLEIDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNADAVAGLQ PYPRPIMSWS  120
SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL  180
PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNTKFV  240
PSTRLLTRQE LEEAAFGSHA ETTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK  300
KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSTVEEIISK FAQLTPQERA KRKLESLEAL  360
KKTFKKLDHD VNVQEFMSSR YVIVFIRFVI SF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
5f28_A	1e-13	271	362	1	90	MEF2C
5f28_B	1e-13	271	362	1	90	MEF2C
5f28_C	1e-13	271	362	1	90	MEF2C
5f28_D	1e-13	271	362	1	90	MEF2C
6c9l_A	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-13	271	362	1	90	Myocyte-specific enhancer factor 2B
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G195000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209469.1	0.0	putative lipoate-protein ligase A
TrEMBL	A0A251PAU0	0.0	A0A251PAU0_PRUPE; Uncharacterized protein
STRING	EMJ10668	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7499	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-56	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Prupe.5G195000.1.p