PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G183200.1.p
Common NamePRUPE_ppa009757mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 280aa    MW: 29701.8 Da    PI: 5.6926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G183200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10160207455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Prupe.5G183200.1.p 160 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.86E-9154211No hitNo description
SuperFamilySSF474598.64E-18154226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFSGE PGGSGGGLGL RMGSLGGLGD SSVNRDGSLE  60
ESTVTEQSGG GGGRKRRDVS SEDESSKLVS TSSASGLKDS SGKRMKLAGS QNENGGSKAE  120
VEESSAAGDN KPAEQSTKPS EPPKQDFIHV RARRGQATDS HSLAERARRE KISERMKLLQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRMNLNPTI EAFPSKDLGA  240
QPFDGAGLLF GSHTPREYAQ GSHPEWLHMQ VGSSFERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.45051e-120fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G183200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894210.0KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209455.10.0transcription factor bHLH79 isoform X1
SwissprotQ9LV174e-93BH079_ARATH; Transcription factor bHLH79
TrEMBLM5WAA60.0M5WAA6_PRUPE; Uncharacterized protein
STRINGEMJ106540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]