PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G172400.1.p
Common NamePRUPE_ppa026791mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 460aa    MW: 52223.9 Da    PI: 5.9236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G172400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-18187233148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Prupe.5G172400.1.p 187 KGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 233
                         799*****************************.*************97 PP
2Myb_DNA-binding58.31.7e-18239281145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Prupe.5G172400.1.p 239 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 281
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.035182237IPR017930Myb domain
SuperFamilySSF466891.73E-32184280IPR009057Homeodomain-like
SMARTSM007174.8E-17186235IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-29188241IPR009057Homeodomain-like
PfamPF139214.0E-19190247No hitNo description
CDDcd001671.56E-16190233No hitNo description
SMARTSM007178.9E-18238286IPR001005SANT/Myb domain
PROSITE profilePS5129422.269238288IPR017930Myb domain
CDDcd001673.12E-14241284No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22242286IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MMKLYNMKDE FPFEASSSSS KGNYNYLQDF HHLDHQFQVN GSSSNPMFGV QNPCFDPYND  60
TTYTYEASTT DVKFYECKSL NAETNMGHGQ VLDNFQSGSG SLNFPTHTSN PLDHLMGSSH  120
RSATNFLPLD YQDIKPMNFV VPDEVSCINN TDQNGYYKKF GMNGKSRVST LTRGSTYKGR  180
KKSNVVKGQW TIEEDRLLIQ LVEQYGVRKW SHIAQMLPGR IGKQCRERWH NHLRPDIKKD  240
TWSEEEDKIL IQAHAEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQYSK RKCRSKYPRG  300
SLLQEYIKSL NLDSTGSSTG RQRKNKSGNN SATSPNNMAP SSTESHTQQT QNNVGFSCAN  360
DRLVPNYDFN EDPDFCFDDN MFQEGCSIDS LLDDIPCAPV LGENNDDFDG KIMAQASVVA  420
DEEKDFEMEM QVDVDVGPVM ESSEVKKELD LVEMISQVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-471852872104C-Myb DNA-Binding Domain
1msf_C8e-471852872104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G172400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211144.20.0transcription factor MYB98
SwissprotQ9S7L21e-104MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A251PBA30.0A0A251PBA3_PRUPE; Uncharacterized protein
STRINGEMJ123430.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-106myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]