PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G156100.1.p
Common NamePRUPE_ppa016418mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 530aa    MW: 58679 Da    PI: 6.3073
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G156100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.72e-1131575281374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsP 89 
                         lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  +  +p ++++   +++  al+l +e++P
  Prupe.5G156100.1.p 157 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFigSPMNAKDFALDKKEEALRLVYEICP 247
                         689**************************************************9955544434413444444444999999********** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp +lRiTgvg       ++++ +g+ L+ +A++lg++
  Prupe.5G156100.1.p 248 HIQFGHFVANSSILEAFEGESYVHVVDLGMTlglpHGDQWRGLIESLATRAGQPPsRLRITGVGL----YGDRMQIIGDELEAYADRLGIN 334
                         ***************************99873333667*************888879********....9********************* PP

                GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         +ef+v v+++le+l++e++++  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa
  Prupe.5G156100.1.p 335 LEFSV-VESNLENLRPEDIKLLDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSA 421
                         ****9.7********************************88877777...8**************************************** PP

                GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                         +fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++p++  +  +ak  l k++  +gy++ ee+g
  Prupe.5G156100.1.p 422 IFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MLVNAKQWLGKINvCEGYTILEEKG 510
                         **************************************************************97..56789999*****99********** PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                         +lvlgWk++p+v++S+W+
  Prupe.5G156100.1.p 511 CLVLGWKSKPIVAASCWK 528
                         *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.25131509IPR005202Transcription factor GRAS
PfamPF035146.8E-111157528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAPSRNFMPE EYMINHERTN KMSAFDLISH SAMSCYSNPY MPLLEEGNAS ALTFPYLDES  60
GNHKRLKRTI SIAESMSSHN SLYGGGSNNS CVTNGSISRS GSTNSLNTLP RLHFRDHIWT  120
YTQRYLAAEA VEEAAAAMIN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPMNAKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGESYV HVVDLGMTLG LPHGDQWRGL IESLATRAGQ  300
PPSRLRITGV GLYGDRMQII GDELEAYADR LGINLEFSVV ESNLENLRPE DIKLLDGEVL  360
VVNSILQLHC VVKESRGALN SVLQMVHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
AAPIKMLVNA KQWLGKINVC EGYTILEEKG CLVLGWKSKP IVAASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6216452726378Protein SCARECROW
5b3h_A9e-6216452725377Protein SCARECROW
5b3h_D9e-6216452725377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G156100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210018.20.0DELLA protein RGL1
TrEMBLA0A251P9520.0A0A251P952_PRUPE; Uncharacterized protein
STRINGEMJ112170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-80RGA-like 1