PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 232aa MW: 25763.5 Da PI: 9.5347

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G141200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.7e-19	51	99	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W+AeIrdp + + r +lg+++tae Aa a+++a++ ++ Prupe.5G141200.1.p 51 QYRGVRQRK-WGKWAAEIRDP---N-KaVRLWLGTYDTAEAAALAYDEAALGFK 99 69****9.******9...3.35*******************98665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.39E-19	50	109	No hit	No description
PROSITE profile	PS51032	24.105	51	108	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-37	51	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	51	109	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.0E-32	51	109	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-13	52	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	52	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MISALAQVIG NTDQTPLQQV QGNPLITSQS SPAESRSQPA LQDRGNVRRQ QYRGVRQRKW 60 GKWAAEIRDP NKAVRLWLGT YDTAEAAALA YDEAALGFKG SKAKLNFPER VQESSEFGNL 120 TINTQQQHNL NNPENVERVQ VADPVVPNPP HQPIYCAPYV QGGSNSVDYN VHQVLPSHEN 180 YAPQILPTTS STSSSMPSQQ EELRRKQVGS SRSRSDLPNK YRKDFEGSHS R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	50	111	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269\|PubMed:23616605}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269\|PubMed:23616605}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G141200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419871.1	1e-171	ethylene-responsive transcription factor ERF115
Swissprot	Q9FH54	1e-39	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A251P899	1e-170	A0A251P899_PRUPE; Uncharacterized protein
STRING	EMJ11434	1e-135	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF985	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07310.1	8e-18	ERF family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G141200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]