PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130700.1.p
Common NamePRUPE_ppa005343mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 493aa    MW: 55169.8 Da    PI: 7.5168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12303348454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  Prupe.5G130700.1.p 303 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 348
                         799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-4220208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-18296365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-14297353No hitNo description
PROSITE profilePS5088817.003299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEEIMSSCSP NFGQENSATL QQRLQFIVQN RPEWWVYSIF WQASKDSNGQ VALSWAGGHF  60
RSSRDLASKR SNKLVHNYQP KSGFISTERK KVVNREVEAL FNEDMDLDGG DVTDSEWFYF  120
YTVSLTQSFG ACHGTGNILG RAFCSGGFVW LAGDHELQFY ECERVKEARM HGIQTLVCIQ  180
TSCGVLELAS LDVIKEDWGL VELSKSLFGS ENSRVSKPQS SREGHVLVPL LESGMFSAGP  240
QKEWTAQGGT KERFALNIGG SSSDSGPSDS VGNFTTENAE NNGRLKKRGR SSNHGTDRES  300
PINHVEAERQ RREKLNHRFY ALRSVVPNVS KMDKASLLSD AVVYINKLKA KVEELEAKIQ  360
QPPQKPKLGI LSNLEHQSNQ SASSIVDHHR HHHHHQARPR PASSYTNSEV AGAIEVDVKI  420
VGSEAMIRVQ SPDQNYPYAR LMNALKDLEL QVYHASISSV KEMMLQDVVA RVPHGFTSEE  480
AMRTAIIKRW YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24142083192Transcription factor MYC3
4rqw_B1e-24142083192Transcription factor MYC3
4rs9_A1e-24142083192Transcription factor MYC3
4yz6_A1e-24142083192Transcription factor MYC3
5gnj_A4e-25298375383Transcription factor MYC2
5gnj_B4e-25298375383Transcription factor MYC2
5gnj_E4e-25298375383Transcription factor MYC2
5gnj_F4e-25298375383Transcription factor MYC2
5gnj_G4e-25298375383Transcription factor MYC2
5gnj_I4e-25298375383Transcription factor MYC2
5gnj_M4e-25298375383Transcription factor MYC2
5gnj_N4e-25298375383Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G130700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419108.10.0transcription factor bHLH14
TrEMBLA0A251P7Q60.0A0A251P7Q6_PRUPE; Uncharacterized protein
STRINGXP_008245834.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-58bHLH family protein