PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G130400.1.p | ||||||||
Common Name | PRUPE_ppa025417mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 500aa MW: 55822.3 Da PI: 7.0213 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 311 | 357 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ Prupe.5G130400.1.p 311 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 357 799***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.8E-40 | 22 | 218 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.88E-17 | 304 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.58E-14 | 305 | 361 | No hit | No description |
PROSITE profile | PS50888 | 16.037 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-9 | 311 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 311 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-15 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEEIIASSSS PQFCQETSAT CQQRLQFIVQ NRPEWWVYAT FWQASKDSND QISLSWAGGH 60 FKSSKDLASK RSNKVMNNYQ PKFGFNNVER KKVINRGCAE SLFPEDLEDL DMRLVDHGVG 120 DVTDSEWFYF YSVSLTQSFA AGHATNNILG RAFCSGGFVW LAGAHELQFY ECERVKEARM 180 HGIQTLVCIA TPCGVLELAS LDVIKEDWGL VHLSKSLFGS ENNRISKQGS RDGNAPVPFP 240 ESGMFSGPQK DFPRQEGDTK EAAPINIGGS SSDSPSDSVG NFTSENTERT RLKKRGRSTN 300 HGPGRESQLL NHVEAERQRR EKLNHRFYVL RSVVPNVSKM DRSSLLADAV AYINQLKSKV 360 EELEAKIQSQ PQNPNMGNVS NLDHHSSQST SSIVDFHHSS SNNNNNNNNN NNNNNKGAGV 420 VEVDVKILGS EAMIRVQCPD QDYPYAKLMN ALKSLGLQVY HASISSVKEM MIQDIVARVP 480 YGFTSEEAMR MGIIKRWYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-24 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-24 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-24 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-24 | 11 | 218 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 297 | LKKRGRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G130400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418950.1 | 0.0 | transcription factor bHLH14 | ||||
TrEMBL | A0A251P971 | 0.0 | A0A251P971_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245386.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 1e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G130400.1.p |
Entrez Gene | 18776941 |