PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G130300.1.p | ||||||||
Common Name | PRUPE_ppa022201mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 53525.2 Da PI: 7.4456 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 296 | 342 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ Prupe.5G130300.1.p 296 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDRSSLLADAVAYINQLK 342 799***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-39 | 22 | 211 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.158 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 292 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-12 | 295 | 346 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-16 | 296 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 296 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-14 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEEIIPSSSP PQLCQENSVS FQQRLQFIVQ NRPEWWVYSI FWQASKDSND QVALSWAGGH 60 CKSPRDLASK RSNKMVNNKH FVERKKVINN REAESLFHEE MDLDMRLVDH VVGDVTDSEW 120 FYFYSISLTQ SFVAGHATNN ILGRSFCSGG FVWLAGDHEL QFYECERVKK ARMHGIQSLV 180 CIATPCGVLE LASPDVIKED LGLVHLSKSL FLSDNNRVSK QDSRDVNALV PPLESGMFSG 240 GQKDLTKQGD TKEAAPINIG GSSSDSADNF TSDNTESTRM KTRGRSSSNH APQLLNHVEA 300 ERQRREKLNH RFYALRSVVP NVSKMDRSSL LADAVAYINQ LKAKTEELED KIQSQPQNPK 360 RGNVSNADHH HYSQSTSPIV DFHHSNNNNT NRAAAALEVD VKILGSEAVI RVQCPDQEYP 420 YAKLMNALKS LRLQVCHASI SNVKDLMIQN VVVRVPYGFI SDEAMRMGII KKWYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-28 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-28 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-28 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-28 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13594 | 5e-31 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G130300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418948.1 | 0.0 | transcription factor MYC3 isoform X2 | ||||
TrEMBL | A0A251P7U7 | 0.0 | A0A251P7U7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ11317 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G130300.1.p |
Entrez Gene | 18775888 |