PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G126800.1.p
Common NamePRUPE_ppa008843mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 318aa    MW: 34615.2 Da    PI: 8.9882
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-3943104263
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                         ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  Prupe.5G126800.1.p  43 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104
                         7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-273595IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3345101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13447101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDTAQWPQGI VVKPIEEIVT NTCPKPAAAA AVNNLERKAR PQKEQALNCP RCNSTNTKFC  60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSAAAN SSTTTSSTSS  120
ASKRLPDLIQ PQNPKINQGQ DLNLTFPATN QDFRNIISDH LVHHHQQHHQ LPNNNNMENS  180
NKQNHINISA SSPSSTTTTT TSHLSALELL TGLTSRGLNS FMPMPVPDPN NNNNNNTVYS  240
TTSGFPMQDF KPTLNFSLDG LGSGYGSLQG VQESSGRLLF PFEDLKQVSS TGGGIEQNKE  300
HGDSTGYWTG MLGGGSW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.25010.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G126800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022860.0KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211201.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP89e-68DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLM5X0130.0M5X013_PRUPE; Uncharacterized protein
STRINGEMJ124000.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.18e-50Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]