PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G123400.1.p
Common NamePRUPE_ppa002617mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 665aa    MW: 73495.7 Da    PI: 6.6939
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G123400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24116216198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF +
  Prupe.5G123400.1.p 116 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR 204
                         99****************************9543..445569************************************************4 PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                             ++el+v+v+r
  Prupe.5G123400.1.p 205 --GGNGELRVGVRR 216
                         ..378899****98 PP
2Auxin_resp103.82.1e-34242321183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a ha++t++ F v+Y+Pr+  s+F++ v+k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d+++ +W++SkWrsLk
  Prupe.5G123400.1.p 242 ATHAVATQTLFVVYYKPRT--SQFIIGVNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISS-HWSHSKWRSLK 321
                         689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-40104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40109231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-20114216No hitNo description
PfamPF023628.5E-22116216IPR003340B3 DNA binding domain
SMARTSM010191.9E-23116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351116218IPR003340B3 DNA binding domain
PfamPF065074.2E-32242321IPR010525Auxin response factor
PfamPF023094.1E-7529592IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-14552632No hitNo description
PROSITE profilePS5174524.892556637IPR000270PB1 domain
PfamPF023092.7E-6600640IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN  60
LPSKILCRVL NINLLAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL  120
TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TATHAVATQT LFVVYYKPRT SQFIIGVNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN  360
KRPRPAAEIP ALDATMSPPS VATEGKRSEN HALWHHQQAD VISNNNSISR TQTDGGWLSQ  420
TGGSKLMFQD AMDDTKIFSG CPVFSGYSTP NSSKLKNDST CDHVENGKKT ETATSCRIFG  480
IEFINHSASS PSMEKTPLQP INASTGITEG RVSNSLAAES DQKSDVSKAS KENKPGQLQV  540
SSKETQTKQS CSTSTRSRTK VQMQGMAVGR AVDLTILEGY DQLIDELEEM FDIKGQIHSG  600
NMWQIVFTDN EGDMMLMGDD PWAEFCDMVK RIFICSSQDV KKISAGCKLP LSSLEVEGTV  660
TSSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1751234422355Auxin response factor 1
4ldw_A1e-1751234422355Auxin response factor 1
4ldw_B1e-1751234422355Auxin response factor 1
4ldx_A1e-1741234422355Auxin response factor 1
4ldx_B1e-1741234422355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G123400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419776.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A251P7E20.0A0A251P7E2_PRUPE; Auxin response factor
STRINGEMJ114920.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9