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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G106700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 35248.5 Da PI: 4.7317 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.3e-30 | 128 | 185 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh Prupe.5G106700.2.p 128 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 185 79*************************998**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-30 | 113 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.627 | 122 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 125 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-33 | 127 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-25 | 129 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MENWDLQAVV RGCNTTANID EAMENSQIPY CFAPLSIEEE DDFFHALPQL FEATAALDEL 60 EELYKPFYPV LQPSAPPVIL ASSMSVPQEA ITVEVPKKLK ESSTVCKKIR KNQSKRVVKE 120 VRAEELFSDV WAWRKYGQKP IKGSPYPRSY YRCSSSKGCS ARKQVERSCS NPETFIITYT 180 AEHNHVHPTR RNSLAGSTRS KFPSSKNKDK CKSSLNSPAT TNLAASIEED HDVQSASTST 240 VKEEAQLLLE EDEISHENVM LDVMLSDEII PSLEDLDREL EPVMDGWFLD QFSDNFPSPW 300 FNIGHSNTVT GAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-18 | 118 | 188 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-18 | 118 | 188 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G106700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU013683 | 3e-80 | GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419021.1 | 0.0 | probable WRKY transcription factor 29 isoform X2 | ||||
TrEMBL | A0A251P6M0 | 0.0 | A0A251P6M0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239089.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 2e-40 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G106700.2.p |