PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G091700.1.p
Common NamePRUPE_ppa017030mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 698aa    MW: 76771.2 Da    PI: 5.3683
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G091700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.74.5e-1313146821374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +++  al+l+++vsPi+
  Prupe.5G091700.1.p 314 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPRGTTISRLTAYYTEALALRVTRLWPHVFQITPPREFD-RGDDDSGIALRLLNQVSPIP 403
                         6899*****************************************************************8.4567777899********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v
  Prupe.5G091700.1.p 404 KFLHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-V 489
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk++E++aVn+v+qlh++l + +  +   +++L l++s++P++v ++eqea+hn++++ +r++++l++ysa+fd +++
  Prupe.5G091700.1.p 490 VDRLEDVRLWMLHVKEQESVAVNCVFQLHKTLYDGTGGA--LRDFLGLIRSTNPTIVLMAEQEAEHNEPRLEARVSNSLKHYSAIFDLISS 578
                         ********************************6655444..489*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvl 360
                         +lp+es++rikvE++ ++rei+nv+aceg++r erhe++ekWr+ +e+ GF+ + ++e+++ q + ll++++++ y+v+++     ++++l
  Prupe.5G091700.1.p 579 SLPSESQARIKVEEM-FAREIRNVIACEGSDRLERHESFEKWRKLMEQGGFRCMGITEREMLQSQFLLKMYAGENYNVKKQgqdgAAAVTL 668
                         ***************.********************************************************999****76665445556* PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         gW+d+pL++vSaW+
  Prupe.5G091700.1.p 669 GWMDQPLYTVSAWT 682
                         *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.772288658IPR005202Transcription factor GRAS
PfamPF035141.6E-128314682IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPAMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KTSSCSLKQS IRLPPLATSG PVTSAAQTAA FVEARKEVND QFWEKKRGKS  120
LKRFAERGSV DDDESCINRA KRKKGCFDNG KGDEGGDGLS LGQLGAGNFW FQPDFHVPRS  180
VQSITTGLDP PPELPFSLTC SGDEERVCYV PAEAISQPLP LSNNPWLDSI VTEITDLGEK  240
DAETRRGLGR EASAAASSAS SDSQSLGLRL NESASEHEAG NGSRDPYIPH GGAGVEAEDD  300
DDDESEGEHQ DFELVSLLTA CVEAIGLKNI AAINHFIAKL GELASPRGTT ISRLTAYYTE  360
ALALRVTRLW PHVFQITPPR EFDRGDDDSG IALRLLNQVS PIPKFLHFTS NEILLRAFEG  420
KDRVHIIDFD IKQGLQWPSL FQSLASRANP PSHIRITGIG ESKQELNETG DRLAGFAGAL  480
NLPFEFHPVV DRLEDVRLWM LHVKEQESVA VNCVFQLHKT LYDGTGGALR DFLGLIRSTN  540
PTIVLMAEQE AEHNEPRLEA RVSNSLKHYS AIFDLISSSL PSESQARIKV EEMFAREIRN  600
VIACEGSDRL ERHESFEKWR KLMEQGGFRC MGITEREMLQ SQFLLKMYAG ENYNVKKQGQ  660
DGAAAVTLGW MDQPLYTVSA WTPVDVAGSS SSFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-7332168326380Protein SCARECROW
5b3h_A5e-7332168325379Protein SCARECROW
5b3h_D5e-7332168325379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G091700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209056.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM5WU020.0M5WU02_PRUPE; Uncharacterized protein
STRINGEMJ102550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein