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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G086600.1.p | ||||||||
Common Name | PRUPE_ppa025455mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 19741.1 Da PI: 9.4728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 90 | 137 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ + ++ Lr+ lP ++K s ++ + ++v+YIk+Lq Prupe.5G086600.1.p 90 RDIERQRRQEMATLYASLRSQLPLeY---LKGKRSISDHVHETVNYIKHLQ 137 679*********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 81 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-8 | 82 | 141 | No hit | No description |
PROSITE profile | PS50888 | 12.481 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-9 | 90 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-4 | 90 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-9 | 91 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDYIPSNTLQ FDQALQQADE LFQISCLPYT EHTTQENQAL PPTPSQDGRD LTCRPKSGQK 60 RRASISSSSI TFGEIEDEQN PKGNKKIMPR DIERQRRQEM ATLYASLRSQ LPLEYLKGKR 120 SISDHVHETV NYIKHLQSNI QELHNKRDGL KRSCDTSCSS STSTTTKSKR RR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G086600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208837.2 | 1e-118 | transcription factor bHLH126 | ||||
TrEMBL | A0A251P5K2 | 1e-124 | A0A251P5K2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10036 | 1e-124 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G086600.1.p |
Entrez Gene | 18776651 |