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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Prupe.5G076100.1.p |
| Common Name | PRUPE_ppa015786mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
NAC |
| Protein Properties |
Length: 376aa MW: 43949 Da PI: 6.7517 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.5G076100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 181.2 | 2.6e-56 | 20 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nratk+g+Wkatg+
Prupe.5G076100.1.p 20 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTdDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 109
69****************************.9***************954555553555******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk+++s ++ l+g++ktLvfykgrap+g+k+dW+mheyrle
Prupe.5G076100.1.p 110 DKAIYS-RNILIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 149
******.999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MFEMQVLDNY TEKMNTFSHV PPGFRFHPTD EELVDYYLRK KIASKRIDLD VIKDVDLYKI 60
EPWDLQELCK IGTDDQNEWY FFSHKDKKYP TGTRTNRATK AGFWKATGRD KAIYSRNILI 120
GMRKTLVFYK GRAPNGQKSD WIMHEYRLET SENGTPQEEG WVVCRVFKKR LATVRKMGDY 180
ESPCWYDQVS FMPELESPRR SISHPYASPY HQQQQHYSQC KQELDLQYNM PHHHHHDSFL 240
QLPQLESPKV PQSAPYGSML QSSTLTQEEQ LQQHINQQQN MFNSSSSSLM LYNNNDQQSV 300
DQVTDWRVLD KFVASQLSQD QQDASKEVTN YSNAASMFHV ANMLANESSR RPDNENLGRD 360
YASTSTSSCQ IDLWK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
