PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 254aa MW: 28183.5 Da PI: 4.6912

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G065300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	83	133	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Prupe.5G065300.1.p 83 PVYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 133 68***998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-12	83	133	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.92	84	141	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-38	84	147	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-22	84	142	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.6E-32	84	142	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	85	96	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-33	85	143	No hit	No description
PRINTS	PR00367	3.0E-10	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEEEQFNSID SEAQTTSSSY SNSTTSSSAE SEAQKVSKRS NQQVLDHDQK GTNDDDDDDD 60 DDDQISQKKA KINGSNGTQH HHPVYRGVRM RQWGKWVSEI REPRKKSRIW LGTFPTPEMA 120 ARAHDVAALT IKGRSAVLNF PELAQELPRP ASASAKDIQA AAAKAAALNY PISCSSSSSS 180 SREAEAETEA ELSQHRQAVH DTQDSSTSPS TNNDDMFFDL PDLLLDFGHH RDHGFCFSVP 240 WLEEPNNFLW MEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-19	74	141	4	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G065300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT369559	0.0	KT369559.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209502.1	0.0	ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	3e-48	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	M5WBL6	0.0	M5WBL6_PRUPE; Uncharacterized protein
STRING	EMJ10701	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-41	ERF family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G065300.1.p
Entrez Gene	18777123

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]