PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G045000.1.p
Common NamePRUPE_ppa004161mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 545aa    MW: 60555.3 Da    PI: 6.5994
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G045000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like871.8e-27308362156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++
  Prupe.5G045000.1.p 308 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKAEGLTRHNVASHLQKYRMH 362
                         5689*****************.********************************96 PP
2Response_reg295.4e-11201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+ d++++ +  +++ le  +y +v+++ + +eal  +  +   +++ ++ ++ +  +G+ +++ +++++ +lp i+ +     +++ ++
  Prupe.5G045000.1.p  20 VLLLDEDNSSAAEIKSKLEAMDY-IVTTFCNETEALSAFSSNPlsFQVAIVEVNAS--NGHGVFQFLETAK-DLPTIMTSNIHCLSTMMKC 106
                         7999999****************.***************88886699999887766..5666788888877.9*****999999******* PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         + +Ga +fl Kp ++++l++
  Prupe.5G045000.1.p 107 IALGAVEFLRKPLSEDKLRN 126
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-1616163No hitNo description
SuperFamilySSF521729.11E-1616134IPR011006CheY-like superfamily
SMARTSM004480.005618128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.48319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.97E-921131No hitNo description
PROSITE profilePS5129415.081305364IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-26306364IPR009057Homeodomain-like
SuperFamilySSF466897.08E-18307365IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24308363IPR006447Myb domain, plants
PfamPF002499.6E-9311360IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLKV LLLDEDNSSA AEIKSKLEAM DYIVTTFCNE TEALSAFSSN  60
PLSFQVAIVE VNASNGHGVF QFLETAKDLP TIMTSNIHCL STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SAISESLKPV KESVVSILQI KQETEEQKCK ISVETENVSR  180
VHESDREQSV GSDKYPAPST PQLKQGSRLL ADGDCQDQIN CLSEKESGEN DSESKSVETT  240
CGNPIDEGTV QLSEPQMTRK RVVKEENDSV NGSQHPHNRN SANDVGGVAE NLSKASAPNN  300
SCKSNRKKMK VDWTPELHKK FVQAVEQLGV DQAIPSRILE LMKAEGLTRH NVASHLQKYR  360
MHKRHILPKE DDRRLPHPRD PIQRSYYPQN QKPIMAFPPY HYNNSLSMAP VYPMWGQPGS  420
QPAGVQMWGS PGYPQWQPSE SWHWKPYQGM QADAWGCPVM PPLQGGYPSY PQNAAGFHAG  480
VVDNSFDLHP AEEVVDKVVK EAISKPWLPL PLGLKPPSTE GVLDELSRQG ICNIPPHVNR  540
SNTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16313362655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G045000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419555.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_020419556.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_020419557.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-149APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A251P3J00.0A0A251P3J0_PRUPE; Uncharacterized protein
STRINGXP_008229552.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-146ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]