PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Prupe.5G021400.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 337aa MW: 36948.3 Da PI: 8.8456

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G021400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.8	4e-23	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ Prupe.5G021400.1.p 76 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 120 79***************************************9986 PP
2	QLQ	50.4	6.9e-18	14	48	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT aQ++++++Q+l++KyL a++PvPp+Ll +i+ Prupe.5G021400.1.p 14 PFTVAQWAEMEHQALIFKYLKAGLPVPPDLLGPIR 48 9******************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.9E-9	13	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.018	14	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.0E-13	14	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.42	76	120	IPR014977	WRC domain
Pfam	PF08879	7.6E-20	77	119	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSGSSVGNGG LAPPFTVAQW AEMEHQALIF KYLKAGLPVP PDLLGPIRTS FNLISSNFLR 60 HHPTLGYTSY CGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVES 120 QTTSQSSSTV TSDSVIGSSS HSGSFQNMPL HSMVNSGGLC FGSNVSQLKM EPIPYGIGNS 180 GNRGRNGAEE HNFMSEPSGS VRCLGMDSTV DSPWHLMVPR VSLKSESKNC SLLLNNSSQL 240 ETLQHTEPLT VDAAITKQQQ HQYVGGQFGF PGSLKHEQNS LQPFFDEWPK SRDLGFHLSD 300 HRSTNTLTAT QLSMSNAMAP SKFFARSADS PTDAYT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G021400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209638.2	0.0	growth-regulating factor 4
TrEMBL	A0A251P276	0.0	A0A251P276_PRUPE; Uncharacterized protein
STRING	XP_008238100.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-41	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Prupe.5G021400.1.p