PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

BES1

Protein Properties

Length: 681aa MW: 76644 Da PI: 6.2106

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G013400.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	143.2	2.4e-44	68	199	2	134
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 +g++++++E+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr++ p + a+g + sp s Prupe.5G013400.4.p 68 NKGKREREREKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSPPPS--QIAMGMRSVESPVS 156 5799***************************************************************765555..77888888899999 PP DUF822 93 slqsslkssalaspvesysaspksssfpspssldsislasa..a 134 s ++ks + + p ++ s++ + ++++sp+slds+ +a+ + Prupe.5G013400.4.p 157 SGVRATKSLECHPP-HNPSSVVRIDESLSPASLDSVVIAERdtT 199 98866666666655.55677889999********99987542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.9E-45	69	203	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	2.4E-169	240	672	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	4.06E-157	241	672	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	2.3E-81	265	636	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	278	292	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	299	317	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	321	342	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	414	436	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	487	506	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	521	537	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	538	549	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	556	579	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.4E-54	594	616	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MNDDQSLRQD LDPQSDHSSD YLPHHPHHPS HPLQPQQQPQ PQPRRPRGFA ATAAGSVGPT 60 SPSTPTTNKG KREREREKER TKLRERLRRS ITSRMLAGLR QYGNFPLPAR ADMNDVLAAL 120 AREAGWVVEA DGTTYRQSPP PSQIAMGMRS VESPVSSGVR ATKSLECHPP HNPSSVVRID 180 ESLSPASLDS VVIAERDTTK NEKFSSGGSP INSVEADQLM QDLPIRPGNH GIGTTAFSTP 240 NPYVPLYVTL ATGFINNYCQ LVDPEGLRQE LTHMQSLSVD GVVVDCWWGI VEGWSPQKYV 300 WSGYRGLFNI LREFKFKLQV VMAFHEYGRS ESGEALIPLP QWILEIGKEN QDIFFTDREG 360 RRNTECLSWG IDKERVLHGR TGVEVYFDFM RSFRTEFDDL FAEGLISAVE IGLGSSGELK 420 YPSFSGRMGW RYPGVGEFQC YDRYLQQSLR RAAKLRGHSF WARGPDNAGE YNSRPHETGF 480 FCERGDYDSY YGRFFLHWYA QSLIDHADNV LSLASLAFDE TKIIVKVPAV YWWYKTSSHA 540 AELTSGYYNP TNQDGYSPVF EVLKKHSVTV KFVCSGLHIS SQDNDEALAD PEGLSWQVLN 600 LAWDQGLLVA GENALSCYDR EGCMRIVEMV KPRNDPDHRH FSFFVYQQPA PLVQGAICFS 660 ELDFFIKCMH GEIAGDLVSC *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MNDDQSLRQD LDPQSDHSSD YLPHHPHHPS HPLQPQQQPQ PQPRRPRGFA ATAAGSVGPT  60
SPSTPTTNKG KREREREKER TKLRERLRRS ITSRMLAGLR QYGNFPLPAR ADMNDVLAAL  120
AREAGWVVEA DGTTYRQSPP PSQIAMGMRS VESPVSSGVR ATKSLECHPP HNPSSVVRID  180
ESLSPASLDS VVIAERDTTK NEKFSSGGSP INSVEADQLM QDLPIRPGNH GIGTTAFSTP  240
NPYVPLYVTL ATGFINNYCQ LVDPEGLRQE LTHMQSLSVD GVVVDCWWGI VEGWSPQKYV  300
WSGYRGLFNI LREFKFKLQV VMAFHEYGRS ESGEALIPLP QWILEIGKEN QDIFFTDREG  360
RRNTECLSWG IDKERVLHGR TGVEVYFDFM RSFRTEFDDL FAEGLISAVE IGLGSSGELK  420
YPSFSGRMGW RYPGVGEFQC YDRYLQQSLR RAAKLRGHSF WARGPDNAGE YNSRPHETGF  480
FCERGDYDSY YGRFFLHWYA QSLIDHADNV LSLASLAFDE TKIIVKVPAV YWWYKTSSHA  540
AELTSGYYNP TNQDGYSPVF EVLKKHSVTV KFVCSGLHIS SQDNDEALAD PEGLSWQVLN  600
LAWDQGLLVA GENALSCYDR EGCMRIVEMV KPRNDPDHRH FSFFVYQQPA PLVQGAICFS  660
ELDFFIKCMH GEIAGDLVSC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-122	243	633	11	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G013400.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007210828.2	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A251P205	0.0	A0A251P205_PRUPE; Beta-amylase
STRING	EMJ12027	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Prupe.5G013400.4.p
Entrez Gene	18778026

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]