PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 764aa MW: 87037.7 Da PI: 6.2206

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G003600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.7e-31	81	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r++tr+gCka+++vkk+++g+w v+kl++eHnHel+p Prupe.5G003600.1.p 81 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQVVCSREGFRRDGGEN--RSKRQRTVTRVGCKAQMTVKKQSSGRWAVSKLVKEHNHELVP 168 9***************************************9988..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-28	81	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-30	289	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.301	569	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-10	575	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-8	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MDFEPLNIEN EAVEFDMGGS GDDDATALDL EHPDDSYDIF DDDLVQSSNS TRSRDDLASG 60 DPNLEPYEGM EFDSEQASRI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QVVCSREGFR 120 RDGGENRSKR QRTVTRVGCK AQMTVKKQSS GRWAVSKLVK EHNHELVPPD KVHCLRSHRH 180 VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNVGFTK VDCQNYMSSS RQRTLGSGGQ 240 FVFDYLKRMQ AEDPGFFFAV QGDFENLTGN IFWADSNSRM NYDYFGDTVT FDTTYRTNRY 300 RVPFAPFTGW NHHGQPVLFG CSLLLNESES SFVWLFQTWL AAMSTRHPVS ITTDQDRIIR 360 AAVGQVFPGT RHRFCKWNVL REAQEKLSDV YHSHPTFEAE FQRCINMTET IDEFESCWES 420 LLQRYDIGDN EWLQSMYDAR QQWVPVFLRD TFFGEMSVTQ GSDNINSYFD GYINASTNIQ 480 VLIKQYEKAI ATRHEKEVKA DYDTMNISPI LRTPSPMEKQ AAKLYTRVVF MKFQEELVET 540 LAYPATMVDD TGSETVYRVA KFGEDHKVYF VRFNVFEKKS SCSCQMFEFS GIICRHILAV 600 FRVTNVLTLP NHYILKRWTK NAKSGVVWDE HTLGLPNDSQ DSSAARYDNL RREAIKYVEE 660 GAESVRVYNV AMDALHEAAS EVTAAKKHGL GVVQSTSINC SQQLQSCTVD QDKKIKELAA 720 ELDIASQQCE AYRAKLLAIL KDMEEQKLKI SVNVRNVRLN LRS*

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MDFEPLNIEN EAVEFDMGGS GDDDATALDL EHPDDSYDIF DDDLVQSSNS TRSRDDLASG  60
DPNLEPYEGM EFDSEQASRI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QVVCSREGFR  120
RDGGENRSKR QRTVTRVGCK AQMTVKKQSS GRWAVSKLVK EHNHELVPPD KVHCLRSHRH  180
VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNVGFTK VDCQNYMSSS RQRTLGSGGQ  240
FVFDYLKRMQ AEDPGFFFAV QGDFENLTGN IFWADSNSRM NYDYFGDTVT FDTTYRTNRY  300
RVPFAPFTGW NHHGQPVLFG CSLLLNESES SFVWLFQTWL AAMSTRHPVS ITTDQDRIIR  360
AAVGQVFPGT RHRFCKWNVL REAQEKLSDV YHSHPTFEAE FQRCINMTET IDEFESCWES  420
LLQRYDIGDN EWLQSMYDAR QQWVPVFLRD TFFGEMSVTQ GSDNINSYFD GYINASTNIQ  480
VLIKQYEKAI ATRHEKEVKA DYDTMNISPI LRTPSPMEKQ AAKLYTRVVF MKFQEELVET  540
LAYPATMVDD TGSETVYRVA KFGEDHKVYF VRFNVFEKKS SCSCQMFEFS GIICRHILAV  600
FRVTNVLTLP NHYILKRWTK NAKSGVVWDE HTLGLPNDSQ DSSAARYDNL RREAIKYVEE  660
GAESVRVYNV AMDALHEAAS EVTAAKKHGL GVVQSTSINC SQQLQSCTVD QDKKIKELAA  720
ELDIASQQCE AYRAKLLAIL KDMEEQKLKI SVNVRNVRLN LRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G003600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007208906.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5WTJ3	0.0	M5WTJ3_PRUPE; Uncharacterized protein
STRING	EMJ10105	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Prupe.5G003600.1.p
Entrez Gene	18777115

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]