PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G271500.1.p
Common NamePRUPE_ppa026304mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 178aa    MW: 19734.3 Da    PI: 4.9086
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G271500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.29.3e-2228914100
              DUF260  14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                         ++C++apyf +e+   +f  +  +FGa++++k+l++lp +er+ +  +++ eA+ar  dP+yG+++ il+lqqq+++ +a+l++++ +
  Prupe.4G271500.1.p   2 TGCIFAPYFMHEEaVTDFSSICNVFGANKMSKILSQLPMSERSVTSWTMAVEAHARDIDPIYGCISYILHLQQQVRNIQAQLDEAHVQ 89 
                         57*******9988569******************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.227190IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-21286IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTGCIFAPYF MHEEAVTDFS SICNVFGANK MSKILSQLPM SERSVTSWTM AVEAHARDID  60
PIYGCISYIL HLQQQVRNIQ AQLDEAHVQL ARAVAPVANP NQDLENSNEQ SEVANPTEQA  120
AVAKPTEFES LPQFSLTHTN NGDQRCLSPI VFFLVVILDQ PSGQTFQIRK TLHVWTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2119223113LOB family transfactor Ramosa2.1
5ly0_B1e-2119223113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G271500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235796.11e-32PREDICTED: LOB domain-containing protein 29-like
TrEMBLA0A251PT511e-130A0A251PT51_PRUPE; Uncharacterized protein
STRINGEMJ145951e-129(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.14e-29LBD family protein