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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G253600.1.p | ||||||||
Common Name | PRUPE_ppa020620mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 44507 Da PI: 6.8526 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.7 | 1.5e-46 | 83 | 208 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+rF+P deelvv+yLkkkv +++l+ + i ev++y+++P+ L k k +e ewyfF++rd+ky++g+r++ra+ sgyWkatg dk+ Prupe.4G253600.1.p 83 PPGYRFNPLDEELVVHYLKKKVLDQPLPP-NRIIEVNLYRHNPEFLAeKYRKYGEAEWYFFTPRDRKYKNGSRPKRAAGSGYWKATGADKA 172 9*************************999.6799************9344455788*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +g+lvg +k Lvfy+g+ pkg kt+W+mhe+r+ Prupe.4G253600.1.p 173 VRS-NGALVGFRKALVFYRGKPPKGDKTNWIMHEFRV 208 **9.99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-56 | 81 | 235 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 82 | 235 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 83 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEPVEQSHPH SKASVTSQVA SYSLINKQSH AQAHLTHDLT QPNEPGNSLI TSVSAGAELS 60 DDESNSFNNN LKNEEDEFFD SFPPGYRFNP LDEELVVHYL KKKVLDQPLP PNRIIEVNLY 120 RHNPEFLAEK YRKYGEAEWY FFTPRDRKYK NGSRPKRAAG SGYWKATGAD KAVRSNGALV 180 GFRKALVFYR GKPPKGDKTN WIMHEFRVKD SPVRRKRGEN DMRLDNWVLC RIYKKVDKNS 240 KRCETRNHVE DPLSPQPQII NGEGMEMEME MEMSTIFDPM VEYDNKYSIM QNVYGVSHNG 300 MVHSQLQAVR MNEVPSYPNI GHPQAIGARA SSMPLLPDSL LESRYIDEST IHPDDLYNLK 360 AFERSLYDTY QRQFPPVENF YPYLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 81 | 235 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 81 | 235 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 81 | 235 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 81 | 235 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 81 | 235 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 81 | 235 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G253600.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214486.1 | 0.0 | NAC transcription factor 29 | ||||
TrEMBL | M5X9E7 | 0.0 | M5X9E7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15685 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-63 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G253600.1.p |
Entrez Gene | 18780521 |