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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G232600.3.p | ||||||||
Common Name | PRUPE_ppa003305mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 492aa MW: 54228.5 Da PI: 6.6434 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.3 | 5.5e-32 | 133 | 190 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Prupe.4G232600.3.p 133 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 190 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.5 | 1.3e-33 | 308 | 366 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Prupe.4G232600.3.p 308 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 366 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 6.8E-25 | 131 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-27 | 132 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-34 | 132 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 133 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.791 | 133 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-37 | 293 | 368 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-29 | 300 | 368 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 303 | 368 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 308 | 367 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 309 | 366 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MVYGSLSSTT YSATTMCSDF DTFDERNSGS FEFKPHAGSN MVTTDYNHQR NDQLVQGQAQ 60 PQSLVSPPLV KSEMAVSSNE LSLSAPVHMV TSGASAPPEG DSDDLSQRGH PNPGVQTSQF 120 DHKGSGPSVI SSDDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI 180 IYKGTHDHPK PQPSRRYNTG AMMPIQEERS EKASSLIGRD DKPSSIYGQM SSTNEPNSTP 240 ERSPVTGNDD SVEGTGSLSN RMAEEIDDDD PFSKRRRMDV GGVDVTPVVK PIREPRVVVQ 300 TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTNAGCP VRKHVERASH DPKAVITTYE 360 GKHNHDVPTA RNSSHDTSGP TTVNGPSRIR SEESDTISLD LGVGINSAAE NKSNEHLQLH 420 SELMERQSHT SSNFKAIQTT PVSTYYGVLN SGMNQYGSRE NPSESRSIEI PPLNHSSYPY 480 PQNMGRVLTG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-37 | 133 | 368 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-37 | 133 | 368 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G232600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ933388 | 0.0 | KJ933388.1 Rosa hybrid cultivar Radrazz SUSI1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214669.1 | 0.0 | probable WRKY transcription factor 20 isoform X2 | ||||
Swissprot | Q93WV0 | 1e-179 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A251PPU1 | 0.0 | A0A251PPU1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15868 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G232600.3.p |
Entrez Gene | 18778661 |