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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G230900.1.p | ||||||||
Common Name | PRUPE_ppa023804mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 380aa MW: 42660 Da PI: 4.4476 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80 | 5.1e-25 | 10 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+Gf+F+P+d++l+ +yL +kv+g+++ ++vi+e+d+y k+ePwd+ + + a+++++yfF+k ++ + +++r r++ sg+Wk Prupe.4G230900.1.p 10 LPVGFKFRPRDDQLLGYYLLNKVRGTSFMYDNVIPEMDLYgKIEPWDIWHeyggRNLAKSEDLYFFTKLKSLSDKDSRVARTIGSGTWKGE 100 79**************************99999*****99568*****743444333366789**************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++v + ++++ g+ k + + + ++ + W+mhey+l Prupe.4G230900.1.p 101 NSGTPVSDPknEENDLGIWKRFHYE--NPKSVQDGCWIMHEYSL 142 ******9985566679999998886..566667999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-30 | 7 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.895 | 10 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-16 | 11 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MAPCESVVNL PVGFKFRPRD DQLLGYYLLN KVRGTSFMYD NVIPEMDLYG KIEPWDIWHE 60 YGGRNLAKSE DLYFFTKLKS LSDKDSRVAR TIGSGTWKGE NSGTPVSDPK NEENDLGIWK 120 RFHYENPKSV QDGCWIMHEY SLHPSLVKPK PNSTDQFVLC RIRKNDKGKR KLRTAEEDNE 180 TDNPVQSQNK RQRPQQVTSF EEFIGNCTPM SEATGIGGSV SYLPTGLTQS QPDSSFAYPT 240 TVVSSQAREN YTDDVSQFHG GSDGDALMSD FSHLDTAPPF TEQALGSVCN QERASDVYEA 300 QQGLGLIDNN IGHWPNPFGS EEDQVNVFDF WMDYDLLNHL IDYDDDNDGP RQSSTAQFMG 360 MGMEKTSTAS SEANVVIID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-16 | 4 | 162 | 9 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G230900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893413 | 0.0 | KT893413.1 Prunus persica cultivar Jinliuzaohong NAC68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007213476.1 | 0.0 | NAC domain-containing protein 45 | ||||
TrEMBL | M5X6G9 | 0.0 | M5X6G9_PRUPE; NAC68 | ||||
STRING | EMJ14675 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 3e-19 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G230900.1.p |
Entrez Gene | 18781016 |