PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G196600.1.p
Common NamePRUPE_ppa023041mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 454aa    MW: 49695.9 Da    PI: 6.6523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G196600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063433811154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Prupe.4G196600.1.p 343 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.894332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-7342385No hitNo description
SuperFamilySSF474595.37E-12342398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036343387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9346389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MADEFQTTGN WWDSSSRTRF ETGTSPPAST LNSLGSFGWQ PDMVDIKARS SMDSGSVSGT  60
SSMVFHGAHK LEEGPDSATG SGGDPSLHMM GLGLSSQATD WNHALFRGEK AETSFRSILQ  120
ENMNSNTNFH QENDQQLQWR DKLFAGGCGD SSNNEFKQMN RGFSLDQTQF SPQYSSGDST  180
VTCQGLPSSF QMDSGAALYG SPSTILQGLL GPHHDNQQPN SAPMNFPYQA NYGVNSSDQL  240
LPPWSKVPQF LRTSPPKQPP QSHLQFSNNA TFWNAPHEAA MKDVRPSFFP SLQPQYPTAR  300
FEEKPKNISE VQESGAVGKK SGSETATKRP RNETSSPLPA FKVRKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVNVLST PYMKSGAAIQ HQQNSDKSKD PDQGPKQDLR  420
SRGLCLVPVS STFPVTHGTT VDFWTPTFGG TFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G196600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180541e-46AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085801e-46BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213019.10.0transcription factor bHLH123
SwissprotQ8GXT39e-88BH123_ARATH; Transcription factor bHLH123
TrEMBLM5WXZ00.0M5WXZ0_PRUPE; Uncharacterized protein
STRINGEMJ142180.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]