![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.4G192000.1.p | ||||||||
Common Name | PRUPE_ppa021577mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38773.7 Da PI: 8.7568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.8 | 1.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+d+++++G g+W+t ++ g++R++k+c++rw +yl Prupe.4G192000.1.p 14 RGPWTPEEDKKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWANYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e++++++ lG++ W++Ia++++ gRt++++k++w+++ Prupe.4G192000.1.p 67 RGRFSFEEEEIIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.625 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.545 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MGKIPCCDKN GLKRGPWTPE EDKKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWANY 60 LRPDIKRGRF SFEEEEIIIQ LHSVLGNKWS AIASRLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHTPRL DLLELSSAIC STLYNSSSPH NPQINVPNLL GIGPIMDPDL LNLATTFLSC 180 QQNQIGFSQI NQTQLTQPSQ IQNPVQEIQS CTTSNTLNVP FLSYPGSSNV AGQGFVPTTN 240 QLGSYDSKYE SMISHIPHQN YNQPCTSNNV NQYQNFQNMS SFGSVLSSTP SSSPATTLNS 300 SPAITYINSS TEDERDSFCS NILMYHDIPN ALNANKLLYQ KNIIN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.4G192000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007212865.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | Q9LDR8 | 1e-102 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | M5WK28 | 0.0 | M5WK28_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14064 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-101 | MYB-like 102 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.4G192000.1.p |
Entrez Gene | 18781210 |
Publications ? help Back to Top | |||
---|---|---|---|
|