PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G174000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 458aa    MW: 52436.8 Da    PI: 6.0653
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G174000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.8e-171769456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        + ++t+eq++ Le+ F +n+++  e++  LAk+lg++ rqV +W+qN+Ra++k
  Prupe.4G174000.1.p 17 KKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWK 69
                        5679************************************************9 PP
2HD-ZIP_I/II109.22.8e-3516107293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+rl++eqv+lLE+sF++++kLeperK  la++Lg+ prqva+W+qn+RAR+kt+ lE dy+a+++++++  +e++rLek+ve+L eelk
  Prupe.4G174000.1.p  16 NKKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWKTRSLELDYNAIQAKLETALAEKRRLEKDVERLGEELK 106
                         79**************************************************************************************998 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.4G174000.1.p 107 K 107
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581171IPR001356Homeobox domain
SMARTSM003891.6E-131475IPR001356Homeobox domain
PfamPF000461.6E-141769IPR001356Homeobox domain
SuperFamilySSF466891.8E-161780IPR009057Homeodomain-like
CDDcd000861.10E-131769No hitNo description
Gene3DG3DSA:1.10.10.607.5E-181878IPR009057Homeodomain-like
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PfamPF117894.8E-12353413IPR004181Zinc finger, MIZ-type
SuperFamilySSF578502.25E-7367436No hitNo description
Gene3DG3DSA:3.30.40.109.5E-6368411IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006974Biological Processcellular response to DNA damage stimulus
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0010082Biological Processregulation of root meristem growth
GO:0016925Biological Processprotein sumoylation
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0045931Biological Processpositive regulation of mitotic cell cycle
GO:0060250Biological Processgerm-line stem-cell niche homeostasis
GO:0080038Biological Processpositive regulation of cytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0019789Molecular FunctionSUMO transferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEFFHTPNHK HSFQHNKKRL TQEQVNLLER SFTSNNKLEP ERKLLLAKQL GIPPRQVAIW  60
YQNKRARWKT RSLELDYNAI QAKLETALAE KRRLEKDVER LGEELKKAHD LVLVLNQTQE  120
LPAHPVICSM FNSSSAEEGV GSSSLQQHED QDNNSDPFFL FLFLVFNFDG VRISFSIHMH  180
MGEYQGKLTY KKDITVWRYP SQSFIVITQR PPWPRPPLLE LMAPQAGSEP PQPLSTRTTS  240
LLSLAVGAMK EIAVDLERDN QFERVKELEN AVIELLGTHE DCSHFSSTIQ SVGEKYQPGP  300
ELTDFDQLFK NEVAMLKANS FSDPQNHPLM RQFREAVWNV HHSGEPMPGE EQEDIVMTSN  360
QCNILNVTCP LSGKPITELQ HPVRSVVCKH VYDKGSIMHY LRSKNTRCPV AACPKLLQAD  420
KVVCDPLLLV EIDELRAMKE QTVMTDVIED FTELDEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G174000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A251PLZ90.0A0A251PLZ9_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-30homeobox protein 52