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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.4G156600.1.p |
| Common Name | PRUPE_ppa009344mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
DBB |
| Protein Properties |
Length: 297aa MW: 31460.3 Da PI: 5.1568 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.4G156600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.1 | 1.4e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC C ++ Hk H++vpl
Prupe.4G156600.1.p 4 QCNVCEAAEANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
7******99*********************88999999999986 PP
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| 2 | zf-B_box | 29.5 | 1.5e-09 | 52 | 92 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
++kC+ ++e +fC +++ llC++C +++H H
Prupe.4G156600.1.p 52 MPKCDICQEAVGYFFCLEDRALLCRTCDVAIHAAnslvsaH 92
799*******9*********************655566666 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLSAS HMPKCDICQE 60
AVGYFFCLED RALLCRTCDV AIHAANSLVS AHRRFLLTGI KVGPEPTEPD SGGGGVGGGG 120
VGVGASSSSV KLRSGSGSGS GSGSRCDTHN PMPVECKVAP AGVDVMPFAG GSSAGTVPQW 180
HIDEFLGLSD FDQSFSYIEN GSSKADCGKL GEYDSPALKS SEEEMEDYEC IGEVPETSWM 240
VPQVPSPPTA SGLYWPRSSQ ISSDFAVFVP DICHSQMQNP LYSQHNGTVS KRRRQF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ732178 | 0.0 | JQ732178.1 Prunus persica light-regulated zinc finger protein 1 (LZF1) mRNA, partial cds. |
