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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G154000.1.p | ||||||||
Common Name | PRUPE_ppa020506mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 33821.6 Da PI: 4.3517 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75.7 | 1.1e-23 | 6 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvka..eekewyfFskrdkkyatgkrknra...tksg 81 +p+G+rF P++eel+ +yL ++v+g++ + v++++d+y + ePw++ + + + +++++y F++ +kk+++g+r r+ t +g Prupe.4G154000.1.p 6 VPVGYRFTPSEEELLLHYLLPRVNGNDYPK-GVVPDCDLYGTkEPWEIWRdfhhS--SpdDQEDIYVFTTLKKKTPNGSRFCRTvgvTGTG 93 599************************999.99*******9879****7423322..24355688******************645588** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk + k++ + g+++g++k + + + +p+ +W+m e++l Prupe.4G154000.1.p 94 VWKGEDSGKKIRA-CGNDIGIRKRFRYMNPGSPH--DDRWIMLEFQL 137 ************9.999***********655555..89*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-29 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.139 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-15 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGGYQVPVGY RFTPSEEELL LHYLLPRVNG NDYPKGVVPD CDLYGTKEPW EIWRDFHHSS 60 PDDQEDIYVF TTLKKKTPNG SRFCRTVGVT GTGVWKGEDS GKKIRACGND IGIRKRFRYM 120 NPGSPHDDRW IMLEFQLDES LVRVRNKETI VLCLVRKKET SGKSKLEERQ NHEVDLPSSG 180 EIQAQYVHDD QQQHIDASTE DQLFLEDYLM NDVEGEHDTM VNPSLLAQYD QQDMIGTSTE 240 DQLRVLEDFL MNDVEGEQDT MVNPALLAQY GQQGTSIEDQ LRLFEDYLMS DIEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-17 | 6 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-17 | 6 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-17 | 6 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-17 | 6 | 163 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-17 | 6 | 163 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-17 | 6 | 163 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-17 | 6 | 163 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G154000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893414 | 0.0 | KT893414.1 Prunus persica cultivar Xiaobaitao NAC66 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417161.1 | 1e-144 | NAC domain-containing protein 66 | ||||
TrEMBL | M5WY38 | 0.0 | M5WY38_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14263 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 2e-20 | NAC domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G154000.1.p |
Entrez Gene | 18779233 |