PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G138500.1.p | ||||||||
Common Name | PRUPE_ppa026843mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 37055.3 Da PI: 7.1679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165 | 2.7e-51 | 22 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLpk++++ +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+ Prupe.4G138500.1.p 22 LPGFRFHPTDEELVEFYLHRKVEKKAISI-ELIKSIDIYKHDPWDLPKAINTaGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKP 111 59***************************.89***************765553788*********************************** PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkktLv+y+g+a kg+ktdW+mhe+rl Prupe.4G138500.1.p 112 IHSHggqGHACIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 151 ***85544445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.851 | 21 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-54 | 21 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 23 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDSNYTSSKD DHQYIDEDDV QLPGFRFHPT DEELVEFYLH RKVEKKAISI ELIKSIDIYK 60 HDPWDLPKAI NTAGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK PIHSHGGQGH 120 ACIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPNPASSNEY IHRSSNTKNI SSTDPQQEAE 180 IWTLCRIFKR NVSYKKYTAD CRGLSGAKRH PMDTVSSKKC TSDQDDLDQS NNYISFGTSD 240 NIICYEEKKP VVNHTNMNNF NGSNQQLHAV GQLSSNMPAT YPYMETFSNF SYQDLENELL 300 NENWDELRSA AVHLAFDPTF LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 12 | 196 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 12 | 196 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 12 | 196 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 12 | 196 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-49 | 12 | 196 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 12 | 196 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G138500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214391.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M5X940 | 0.0 | M5X940_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15590 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 4e-87 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G138500.1.p |
Entrez Gene | 18780395 |