PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G124000.6.p | ||||||||
Common Name | PRUPE_ppa004704mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 53912 Da PI: 7.8583 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 8.6e-10 | 133 | 157 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Prupe.4G124000.6.p 133 GEKDCAHYMLTRTCKFGELCKFDHP 157 7889********************8 PP | |||||||
2 | zf-CCCH | 28.4 | 2.9e-09 | 184 | 210 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Prupe.4G124000.6.p 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.5 | 9.4e-13 | 233 | 257 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Prupe.4G124000.6.p 233 EPPCAFYMKTGQCKFGATCKFHHPK 257 79*********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Prupe.4G124000.6.p 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332 5789*********************9 PP | |||||||
5 | zf-CCCH | 36.9 | 6.1e-12 | 390 | 412 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Prupe.4G124000.6.p 390 IECDYYMKTGECRFGEQCKYHHP 412 68********************8 PP | |||||||
6 | zf-CCCH | 40.3 | 5.4e-13 | 443 | 468 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Prupe.4G124000.6.p 443 GVAICVYYLKTGTCKYGATCKFDHPP 468 5789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.014 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 183 | 210 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 183 | 211 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 188 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 189 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 230 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.948 | 230 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 233 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 233 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 235 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-7 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 306 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-10 | 308 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 311 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 312 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 385 | 415 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 386 | 413 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 386 | 414 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 389 | 412 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 392 | 412 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.516 | 441 | 469 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-8 | 441 | 468 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 443 | 468 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 444 | 468 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-6 | 446 | 466 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MSSHLYGYGA TQSAAAAAAA TAGLSSVYTS RTLTDPTLRY LSGSDPFASA TDHHSRSSSM 60 YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE 120 SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL 180 PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYM 240 KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTTIQPE GTGFAVKLPV SFSPALLYNS 300 KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYAINPP IGAISHPIVA PPAAGLNIGV 360 INPAASIYQT LAQPTVGGGQ TVYPQRFGQI ECDYYMKTGE CRFGEQCKYH HPIDRSAVTL 420 STTKPVQQQN VKLTLAGLPR REGVAICVYY LKTGTCKYGA TCKFDHPPPG EVMGMAASQG 480 ASGGEANDFT HEQQQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G124000.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 6e-64 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 6e-64 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211846.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | M5X1V9 | 0.0 | M5X1V9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13045 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G124000.6.p |
Entrez Gene | 18780339 |