PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G124000.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 491aa    MW: 54665 Da    PI: 8.3842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G124000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.5e-10124148226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+G+ CkF H+
  Prupe.4G124000.4.p 124 GEKDCAHYMLTRTCKFGELCKFDHP 148
                         7889********************8 PP
2zf-CCCH28.42.9e-09175201127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f +t  Ck+G rCkF+H++
  Prupe.4G124000.4.p 175 PGEPDCPYFIKTQRCKFGMRCKFNHPK 201
                         5789*********************96 PP
3zf-CCCH39.59.3e-13224248327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Prupe.4G124000.4.p 224 EPPCAFYMKTGQCKFGATCKFHHPK 248
                         79*********************96 PP
4zf-CCCH38.52e-12298323126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG++C+++H+
  Prupe.4G124000.4.p 298 PGEPDCPFYLKTGSCKYGATCRYNHP 323
                         5789*********************9 PP
5zf-CCCH36.96e-12385407426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++++tG+C++G++Ck++H+
  Prupe.4G124000.4.p 385 IECDYYMKTGECRFGEQCKYHHP 407
                         68********************8 PP
6zf-CCCH40.35.3e-13438463227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         + ++C ++++tGtCkyG++CkF H+p
  Prupe.4G124000.4.p 438 GVAICVYYLKTGTCKYGATCKFDHPP 463
                         5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436122150IPR000571Zinc finger, CCCH-type
SMARTSM003560.014122149IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7124148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018174201IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6176201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5179204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4180202IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948221249IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10224248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6224249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5226247IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892297325IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4303322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6380410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028381409IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6381408IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9384407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4387407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516436464IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8436463IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10438463IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6439463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6441461IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVQLGTVFFI CLINCLMSSS LVFLYWHLGP YIYKNRSTRK FIFVFLIYVL SYSKLLFKLY  60
LYGNLYVSSG FLVYTFLLRT LALYHQSFMG AYNTIGQEAW YSALAKRPRY ESASNLPIYP  120
QRPGEKDCAH YMLTRTCKFG ELCKFDHPIW VPEGGIPDWK EVPLVAPSES LPERPGEPDC  180
PYFIKTQRCK FGMRCKFNHP KEKLAAAVAS ENADVFALPE RPSEPPCAFY MKTGQCKFGA  240
TCKFHHPKDI QIPSAEQENK IGETGTTIQP EGTGFAVKLP VSFSPALLYN SKELPVRPGE  300
PDCPFYLKTG SCKYGATCRY NHPDRYDFCA AINPPIGAIS HPIVAPPAAG LNIGVINPAA  360
SIYQTLAQPT VGGGQTVYPQ RFGQIECDYY MKTGECRFGE QCKYHHPIDR SAVTLSTTKP  420
VQQQNVKLTL AGLPRREGVA ICVYYLKTGT CKYGATCKFD HPPPGEVMGM AASQGASGGE  480
ANDFTHEQQQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G124000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818006e-64LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132556e-64LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418212.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A251PJK60.0A0A251PJK6_PRUPE; Uncharacterized protein
STRINGEMJ130450.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)