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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G106100.2.p | ||||||||
Common Name | PRUPE_ppa025263mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34805.4 Da PI: 8.9099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.7 | 4.7e-49 | 19 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLpk + + kewyfF++r kky+++ r+nr+tksg+Wkatg dk Prupe.4G106100.2.p 19 LLPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDLPKaSGIVGGKEWYFFCRRGKKYRNSVRPNRVTKSGFWKATGIDK 108 579***************************.89***************523334889********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Prupe.4G106100.2.p 109 PVYSVgdFHSCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148 ****8554556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-55 | 5 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.571 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-26 | 21 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEVQNMMSDS NNIKEDTNLL PGYRFHPTDE ELVRFYLRRK VENKPIRLEL IKLIDIYKYD 60 PWDLPKASGI VGGKEWYFFC RRGKKYRNSV RPNRVTKSGF WKATGIDKPV YSVGDFHSCI 120 GLKKSLVYYR GSAGKGTKTD WMMHEFRLPA SSSKDDTSNI KNYTQEAEVW TLCRILKRDN 180 NYSCRKYASN WQKATSNPKQ IVADSSSKPC SPESDISFGA LAANKDQFER SPIFYNGHMY 240 EGNRFSAGDQ LSLKGEVDPM VNSYISFSNP KEDEMLTSDG NWDELRPMVD CVLNPSLLYS 300 CR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 7 | 183 | 3 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G106100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417773.1 | 0.0 | transcription factor JUNGBRUNNEN 1 isoform X2 | ||||
Swissprot | Q9SK55 | 4e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A251PIM9 | 0.0 | A0A251PIM9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14637 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-85 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G106100.2.p |
Entrez Gene | 18780239 |